Translational Medicine
Installable Claude components bridging discovery and clinical application — clinical-trial tooling, biomarker discovery, patient stratification, real-world evidence, EHR-aware agents, and regulatory-document assistants.
10x Genomics Cloud MCP
MCP server · 10x Genomics · GA
Conversational orchestration of 10x Cloud single-cell, immune-profiling, and spatial-transcriptomics analyses.
AdisInsight Plugin
Claude Code Plugin · Springer Nature · GA
Springer Nature AdisInsight MCP plugin surfacing drug-development pipeline, clinical-trial, and deal intelligence to Claude for repurposing and competitive scouting.
Anthropic PubMed Connector
MCP server · Anthropic · GA
Anthropic-managed NCBI literature search via PubMed and PubMed Central.
BGPT Paper Search (Claude Skill)
Claude Skill · K-Dense · GA
Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server.
Benchling (Claude Skill)
Claude Skill · K-Dense · GA
Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries.
BioContextAI Knowledgebase MCP
MCP server · BioContextAI · GA
Read-only MCP that unifies 14+ biomedical databases (Antibody Registry, UniProt, STRING, AlphaFold, KEGG, Open Targets) for immune and protein-context queries.
BioMCP
MCP server · GenomOncology · GA
Unified biomedical lookup across PubMed, ClinicalTrials.gov, MyVariant, and OpenFDA.
BioPython (Claude Skill)
Claude Skill · K-Dense · GA
Comprehensive molecular biology toolkit.
BioRender Connector
MCP server · BioRender · GA
Scientific-figure assembly from the 50,000+ BioRender icon and template library.
BioServices (Claude Skill)
Claude Skill · K-Dense · GA
Unified Python interface to 40+ bioinformatics services.
Biomni (Claude Skill)
Claude Skill · Stanford SNAP Lab · GA
General-purpose biomedical AI agent that plans and runs multi-step research workflows across genomics, drug discovery, and clinical analysis.
CMS Coverage MCP (Anthropic Healthcare)
MCP server · Anthropic · GA
Anthropic-published MCP server over the CMS Coverage Database — Local and National Coverage Determinations for Medicare prior-auth, appeals, and policy lookup.
CNVkit (Claude Skill)
Claude Skill · SciAgent · GA
Detect somatic CNVs from WES/WGS/targeted BAMs (CNVkit v0.9.x).
COSMIC (Claude Skill)
Claude Skill · SciAgent · GA
Query COSMIC for cancer somatic mutations, gene census, mutational signatures, drug resistance variants.
Cellxgene Census (Claude Skill)
Claude Skill · K-Dense · GA
Claude skill for querying the CZ CELLxGENE Discover census — 50M+ standardized single-cell observations across 1,000+ datasets via TileDB-SOMA, with AnnData / Scanpy integration.
ClinPGx (PharmGKB) (Claude Skill)
Claude Skill · SciAgent · GA
Query the ClinPGx (formerly PharmGKB) REST API plus the CPIC PostgREST companion API for pharmacogenomic clinical annotations, CPIC/DPWG dosing guidelines, gene-drug pairs, variant-drug associations …
ClinVar (Claude Skill)
Claude Skill · SciAgent · GA
Query NCBI ClinVar via E-utilities for variant clinical significance, pathogenicity, disease associations.
Clinical Decision Support (Claude Skill)
Claude Skill · K-Dense · GA
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports …
Clinical Reports (Claude Skill)
Claude Skill · K-Dense · GA
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries).
ClinicalTrials.gov MCP Server (cyanheads)
MCP server · cyanheads (Casey Hand) · GA
Apache-2.0 MCP server over the ClinicalTrials.gov v2 API — trial search, full study records, outcomes / adverse-event extraction, and patient-to-trial matching. Hosted public instance available.
Composer
Plugin · Scripps AI Enablement · Beta
Turns a plain-language scientific problem into a grounded, runnable Claude solution composed from this catalog, reusing recipes and recommending autonomous systems.
Consensus Plugin
Claude Code Plugin · Consensus · GA
Consensus.app MCP plugin bringing AI-powered scientific literature search and evidence synthesis into Claude across all research areas.
Cortellis Plugin
Claude Code Plugin · Clarivate · GA
Clarivate Cortellis MCP plugin surfacing global drug-pipeline, clinical-trial, regulatory, safety, and deals intelligence to Claude for competitive scouting and regulatory work.
DDInter (Claude Skill)
Claude Skill · SciAgent · GA
Query DDInter drug-drug interactions via REST API (1.7M+ interactions, 2,400+ drugs).
DailyMed (Claude Skill)
Claude Skill · SciAgent · GA
Query FDA drug labels (DailyMed) via REST API.
Database Lookup (Claude Skill)
Claude Skill · K-Dense · GA
Search 78 public scientific, biomedical, materials science, and economic databases via REST APIs.
DepMap (Claude Skill)
Claude Skill · K-Dense · GA
Claude skill for querying the Cancer Dependency Map — CRISPR Chronos gene-effect scores, PRISM drug sensitivity, mutation, expression, and CN data across cancer cell lines.
Drug Repurposing (Claude Skill)
Claude Skill · Zitnik Lab (Harvard Medical School) · GA
ToolUniverse agent skill that finds drug-repurposing candidates via target-, compound-, and disease-driven strategies with mechanism and feasibility scoring.
DrugBank MCP Server
MCP server · openpharma-org (community) · GA
Community MCP server exposing a local DrugBank SQLite (17k+ drugs) with 16 query methods for repurposing, target lookup, interactions, and structural similarity.
Ensembl MCP Server
MCP server · effieklimi · GA
MCP server over the Ensembl REST API for gene/transcript lookup, sequence retrieval, variant consequences, comparative genomics, and assembly lift-over.
GWAS Catalog (Claude Skill)
Claude Skill · SciAgent · GA
NHGRI-EBI GWAS Catalog REST API for SNP-trait associations from published GWAS.
Human Protein Atlas MCP Server
MCP server · Augmented Nature · GA
Query the Human Protein Atlas — tissue/blood/brain expression, subcellular localization, cancer markers, and antibody validation/staining data.
Hypothesis Generation (Claude Skill)
Claude Skill · K-Dense · GA
Structured hypothesis formulation from observations.
ICD-10 Codes MCP (Anthropic Healthcare)
MCP server · Anthropic · GA
Anthropic-published MCP server for ICD-10 diagnosis and procedure code lookup, sourced from CMS and CDC, for medical coding and claims workflows.
ISO 13485 Certification (Claude Skill)
Claude Skill · K-Dense · GA
Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems.
Imaging Data Commons (Claude Skill)
Claude Skill · K-Dense · GA
Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index.
Literature Review (Claude Skill)
Claude Skill · K-Dense · GA
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).
Medidata Connector
Claude.ai Connector · Medidata Solutions · GA
Medidata’s clinical-trial MCP connector — query platform documentation (Rave EDC, Data Connect) and predict high-enrollment trial sites during protocol planning.
Monarch Initiative (Claude Skill)
Claude Skill · SciAgent · GA
Monarch Initiative knowledge graph REST API for disease-gene-phenotype associations and cross-species orthology.
NPI Registry MCP (Anthropic Healthcare)
MCP server · Anthropic · GA
Anthropic-published MCP server over the CMS NPPES NPI Registry — validate, look up, and search US healthcare providers by National Provider Identifier.
NeuroKit2 (Claude Skill)
Claude Skill · K-Dense · GA
Claude skill for biosignal processing — ECG, EEG, EDA, RSP, PPG, EMG, and EOG analysis including HRV, event-related responses, and multi-modal physiological insights.
Open Targets (Claude Skill)
Claude Skill · SciAgent · GA
Query Open Targets GraphQL API for target-disease associations, evidence, drug links, safety.
Open Targets Plugin
Claude Code Plugin · Open Targets · GA
Official Open Targets MCP plugin giving Claude GraphQL access to target-disease associations, drug evidence, and target-prioritisation scores.
OpenFDA MCP Server (ythalorossy)
MCP server · Ythalo Saldanha · GA
MIT-licensed npm MCP server over the openFDA drug API — adverse events, safety/labeling, manufacturer lookups, and NDC resolution.
Owkin Pathology Explorer Connector
Claude.ai Connector · Owkin · GA
Owkin’s Pathology Explorer agent — H&E whole-slide image analysis, cell-type detection, and tumour-microenvironment profiling — exposed to Claude as a remote MCP connector.
PLINK2 (Claude Skill)
Claude Skill · SciAgent · GA
GWAS and population genetics tool.
Paper Lookup (Claude Skill)
Claude Skill · K-Dense · GA
Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles.
PathML (Claude Skill)
Claude Skill · K-Dense · GA
Full-featured computational pathology toolkit.
PrimeKG (Claude Skill)
Claude Skill · K-Dense · GA
Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, diseases, phenotypes, and more.
PyDESeq2 (Claude Skill)
Claude Skill · K-Dense · GA
Claude skill for bulk RNA-seq differential expression with PyDESeq2 — size factors, dispersion, Wald / LRT testing, BH-adjusted p-values.
PyHealth (Claude Skill)
Claude Skill · K-Dense · GA
Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14, EHRShot), defining tasks (mortality, readmission, length-of-stay, drug recommendation, sleep …
PyTDC (Claude Skill)
Claude Skill · K-Dense · GA
Claude skill driving PyTDC for Therapeutics Data Commons benchmarks — ADMET, drug-target / drug-drug interactions, drug response, molecular generation, retrosynthesis.
Scanpy-MCP
MCP server · scmcphub · GA
MCP server wrapping Scanpy so Claude can run end-to-end single-cell RNA-seq analyses (QC, clustering, DE, plotting) from natural language.
Scholar Gateway Connector (Wiley)
MCP server · Wiley · Beta
Wiley remote connector for peer-reviewed scholarly content — 3M+ articles, 300+ Life Sciences journals.
Scientific Brainstorming (Claude Skill)
Claude Skill · K-Dense · GA
Creative research ideation and exploration.
Scientific Critical Thinking (Claude Skill)
Claude Skill · K-Dense · GA
Evaluate scientific claims and evidence quality.
SimpleITK (Claude Skill)
Claude Skill · SciAgent · GA
Register, segment, filter, resample 3D medical images (MRI, CT, microscopy) via SimpleITK Python; DICOM, NIfTI, multi-modal.
Synapse.org Connector
MCP server · Sage Bionetworks · GA
Discovery and metadata retrieval across Synapse-hosted biomedical datasets and consortium projects.
ToolUniverse
MCP server · Zitnik Lab (Harvard Medical School) · MIT Lincoln Laboratory · GA
Harvard / MIT MCP server bundling 600+ vetted scientific tools — literature, chemistry, omics, clinical trials — for AI-scientist-style hypothesis exploration.
Treatment Plans (Claude Skill)
Claude Skill · K-Dense · GA
Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties.
WSO2 FHIR MCP Server
MCP server · WSO2 · GA
Open-source MCP bridge that lets Claude search, read, and write FHIR R4 resources against any EHR or sandbox FHIR API with SMART-on-FHIR auth.
bio-research (Claude Code Plugin)
Claude Code Plugin · Anthropic · GA
Umbrella plugin bundling 5 analysis skills and ~10 MCP connectors (PubMed, BioRender, ChEMBL, Synapse, Wiley, Open Targets, Benchling, etc.) for preclinical R&D.
cBioPortal (Claude Skill)
Claude Skill · SciAgent · GA
Cancer genomics (TCGA et al.) via cBioPortal REST API.
clinical-trial-protocol (Anthropic Healthcare Plugin)
Claude Code Plugin · Anthropic · GA
Anthropic Claude Code plugin that drafts FDA/NIH-compliant Phase 2/3 clinical-trial protocols for drugs or devices via a waypoint-based workflow.
fhir-developer (Anthropic Healthcare Plugin)
Claude Code Plugin · Anthropic · GA
Anthropic Claude Code plugin for authoring FHIR R4 resources with LOINC, SNOMED, and RxNorm validation.
gnomAD (Claude Skill)
Claude Skill · SciAgent · GA
GnomAD v4 population variant frequencies via GraphQL API.
histolab (Claude Skill)
Claude Skill · K-Dense · GA
Lightweight WSI tile extraction and preprocessing.
instrument-data-to-allotrope
Claude Skill · Anthropic · GA
Converts 40+ lab-instrument output formats to Allotrope Simple Model JSON / CSV for LIMS and data-lake ingestion.
nextflow-development
Claude Skill · Anthropic · GA
Runs nf-core rnaseq, sarek, and atacseq pipelines on local FASTQ or GEO/SRA inputs.
nnU-Net (Claude Skill)
Claude Skill · SciAgent · GA
Medical image segmentation with nnU-Net’s self-configuring framework — auto-selects architecture, preprocessing, training for any modality.
openFDA (Claude Skill)
Claude Skill · SciAgent · GA
Query openFDA REST API for adverse events (FAERS), labeling, product info, recalls, enforcement.
pacsomatic (Claude Skill)
Claude Skill · K-Dense · GA
Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs.
prior-auth-review (Anthropic Healthcare Plugin)
Claude Code Plugin · Anthropic · GA
Anthropic Claude Code plugin that reviews prior-authorization request documents and surfaces gaps against payer rules.
pydicom (Claude Skill)
Claude Skill · K-Dense · GA
Python library for working with DICOM (Digital Imaging and Communications in Medicine) files.
scientific-problem-selection
Claude Skill · Anthropic · GA
Structured framework for research project ideation, risk assessment, and troubleshooting, based on Fischbach & Walsh (Cell 2024).
scikit-survival (Claude Skill)
Claude Skill · K-Dense · GA
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival.
scvi-tools
Claude Skill · Anthropic · GA
Deep-learning workflows for scVI, scANVI, totalVI, MultiVI, PeakVI, DestVI, and related scvi-tools models for single-cell omics.
single-cell-rna-qc
Claude Skill · Anthropic · GA
scverse MAD-based QC for .h5ad and 10x .h5 single-cell RNA-seq inputs.
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