10x Genomics Cloud MCP

Conversational orchestration of single-cell, immune-profiling, and spatial-transcriptomics analyses stored in 10x Genomics Cloud.

   
Type MCP server
Supplier 10x Genomics
Availability GA — available from Oct 20, 2025
Pricing Free plugin; requires a paid 10x Genomics Cloud account with active analysis data
Capabilities Read/Write — query and trigger single-cell, immune-profiling, and spatial-transcriptomics analyses stored in 10x Genomics Cloud

How to install

  • Claude Code — plugin marketplace: 
    /plugin marketplace add anthropics/life-sciences
/plugin install 10x-genomics@life-sciences

    Then run /plugin → Configure with a 10x Cloud access token.

  • Claude Desktop — MCPB extension distributed by 10x Genomics; configure with the same 10x Cloud access token.

What it does

Project and analysis listing, reference and annotation-model lookup, analysis-output retrieval, project-file inspection for 10x Cloud Analysis runs.

Primary use cases: Conversational orchestration of 10x Cloud single-cell / Visium / Xenium analyses, retrieval of analysis outputs, prompt-based pipeline configuration.

Notes

Local MCPB binary hosted by 10x Genomics, not bundled in anthropics/life-sciences. Auth via 10x Cloud access token from Security settings. Requires existing cloud projects to be useful.

Field report (2026-06-11): a user confirmed the Claude Code plugin-marketplace install path works as documented.

Sources

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